• Search database by Expression / Cell line / Tissue

    Query database by expression data

    Enter gene symbols to get expression profile

    Here, you can enter gene symbols of interest to get an overview of their measured expressions across three cancer cell lines (Cellminer - NCI-60 panel, CCLE and CoSMIC).

    HGNC symbols e.g. BCL2,BRCA1,BRCA2


    Query database by cell line input

    Search for specific cell line

    Displaying all information for one cancer cell line or a tissue type is enabled here. Information about the cancer cell line's tissue, most effective drugs, mutations and similar cell lines is provided.

    Name: e.g. M14, ACHN, OVCAR_4
    Tissue:






    Query database with your own data

    Paste your expression data here:

    Please enter your list as following: every line should consist of one affy probe name or gene symbol with an expression value tab seperated.

    Preparation of data: External data has to be normalized and log2 transformed to compare it with the database's cancer cell lines. Expression profiles of the cancer cell lines stored in CancerResource have been performed on HG-U133A and HG-U133Plus2 Affymetrix microarray chips.

    Results: The most similar cancer cell lines compared to your query data are calculated.

    Input data:
    e.g.or
    203685_at1.23
    207005_s_at2.34
    203684_s_at3.45
    202431_s_at4.4
    211300_s_at1.05
    201746_at2.66
    BCL21.23
    MYC4.8
    TP532.35
    MAPK11.56
    CCL53.02
    TIMD42.97

    Affy probe names
    Gene symbols

    (Cell-line: REH, control GEO: GSM502628)

    Warning: if the amount of genes exceeds 100 genes the calculation may take up to 10 minutes.
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    In case you encounter any problems please feel free to contact us!